The yWays Library Manual


Table of Contents

Preface
1. License Terms and Availability
2. Getting Started
System Requirements
3. Architecture of yWays
The Core
The UI Subsystem
The Automatic Layout Subsystem
The I/O Subsystem
4. The Core
The Topology Layer
The Layout Layer
Rendering Layer
5. The UI Subsystem
The PathwayView Bean
6. The Automatic Layout Subsystem
Force-Directed Layout Algorithm
Options
Hierarchic Layout Algorithm
Options
7. The I/O Subsystem
Import/Export Handlers
yWays Default Handlers
8. Practical Hints
Defining a network with the help of ReactionNetImpl
A. The yWays XML Format
Topology Layer
Layout Layer